BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB011H08SP1|AL426287
(779 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1495 0.0
>3x_Contig1578
Length = 13178
Score = 1495 bits (752), Expect = 0.0
Identities = 774/781 (99%), Gaps = 3/781 (0%)
Strand = Plus / Plus
Query: 1 gccttccccgctcataaatctctgtatggcgt--cggatactttacattgtttgaacaat 58
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6087 gccttccccgctcataaatctctgtatggcgtagcgga-actttacattgtttgaacaat 6145
Query: 59 ttttttattccgtttagtatagagcctcacccctgggaacattctctacagtaatgtgca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6146 ttttttattccgtttagtatagagcctcacccctgggaacattctctacagtaatgtgca 6205
Query: 119 tatttcagggggagctgatcttacattgagacaagacaagacaagatatcgacacagaat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6206 tatttcagggggagctgatcttacattgagacaagacaagacaagatatcgacacagaat 6265
Query: 179 aatagcactttgtctattattctgtaggttgtttgacttgtttgactaccgttaacaatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6266 aatagcactttgtctattattctgtaggttgtttgacttgtttgactaccgttaacaatt 6325
Query: 239 gcttccgtttgacaagagactggtttcgggttgtcactgggttgagacggcactgacact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6326 gcttccgtttgacaagagactggtttcgggttgtcactgggttgagacggcactgacact 6385
Query: 299 tggtttttgctttgatcgagcagacgttaatacgggcagcacggaacaatattactttgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6386 tggtttttgctttgatcgagcagacgttaatacgggcagcacggaacaatattactttgc 6445
Query: 359 ttagagttgttagtagctgtgagtgatcttctgttatgttttgtatttggtacgtcaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6446 ttagagttgttagtagctgtgagtgatcttctgttatgttttgtatttggtacgtcaata 6505
Query: 419 ctatattctttcttttcgaaaaaaaaagggaagacacatatatcatctctttacccaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6506 ctatattctttcttttcgaaaaaaaaagggaagacacatatatcatctctttacccaaaa 6565
Query: 479 gggtaaagagttgttacagtagtcgtgtttgagcggagatcttaaggrtcaagctccccc 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6566 gggtaaagagttgttacagtagtcgtgtttgagcggagatcttaaggatcaagctccccc 6625
Query: 539 ctggcattacggggattcggagattacactggcgaattccatctttaacagcgatataca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6626 ctggcattacggggattcggagattacactggcgaattccatctttaacagcgatataca 6685
Query: 599 ttcgtacagagtattatcctccaatattccgtatacactgtattctattcttttcaatta 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6686 ttcgtacagagtattatcctccaatattccgtatacactgtattctattcttttcaatta 6745
Query: 659 cccaaatatragggagtgtccaatgggggaatcatcgcgatgtcatgaagatgtgaatgg 718
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6746 cccaaatataaggaagtgtccaatgggggaatcatcgcgatgtcatgaagatgtgaatgg 6805
Query: 719 tagattcggcactccaggatgtttctattcattttttctatatttccggactgtktgggt 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6806 tagattcggcactccaggatgtttctattcattttttctatatttccggactgtttgggt 6865
Query: 779 g 779
|
Sbjct: 6866 g 6866
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5956
Number of Sequences: 1807
Number of extensions: 5956
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 779
length of database: 10,358,551
effective HSP length: 16
effective length of query: 763
effective length of database: 10,329,639
effective search space: 7881514557
effective search space used: 7881514557
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)